HWE Threshold — Glossary
HWE Threshold
Parameterhwe_threshold
Definition
Hardy-Weinberg Equilibrium p-value cutoff. SNPs below this value deviate from expected genotype frequencies and may indicate genotyping error.
Examples
0.001 (standard QC).
hwe_threshold
Hardy-Weinberg Equilibrium p-value cutoff. SNPs below this value deviate from expected genotype frequencies and may indicate genotyping error.
0.001 (standard QC).