Result Detail – Clustering Help

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Result Information
Result ID
35
Type
Clustering
Status
completed
Dataset ID
722
Created
2026-09-21 02:18:13.933986
Clustering Result – Kmeans Help
Method
Kmeans
Clusters (k)
3
Silhouette score
0.3488 (higher = better separated)
Rows clustered
150
Feature columns
Psat1g153760.1;Psat2g159360.1, Psat4g000800.1, Psat7g234480.1, Psat6g170320.2, P13918;Psat0s5g0160.1;Psat5g199920.1, Psat0s3063g0160.1, Psat0s1401g0040.1, Psat1g046920.1;Psat3g040960.1;Psat6g072360.3, Psat4g103520.1, A0A0K0KZR1, Psat0s1587g0080.1, D3VNE1;D3VNE2, Psat3g204960.1, Psat4g152760.1, Psat3g066960.1;Psat4g123280.1, Psat1g060840.1, Psat3g040960.1;Q04593, Psat4g095120.1, P82333, Psat0s2970g0080.1, Psat2g102880.1, Psat5g016560.1, Psat0s2008g0040.2;Psat1g060840.1, Psat1g141040.1;Psat1g141080.3, Psat2g028040.1, Psat2g036360.1;Psat2g036520.1, Psat5g111120.1, Psat1g136200.1, Psat1g046920.1;Psat3g040960.1, P19251, Q9SSY8, Psat1g107440.1;Psat2g149200.1;Psat4g184760.1;Psat4g185080.1, Psat6g235800.1;Psat6g235800.2, Psat2g036360.1;Psat2g036480.1;Psat2g036520.1, Q7M228, Q8LP17, Psat1g046920.1;Psat3g040960.1;Q04593, Psat1g107440.1;Psat4g184440.1, Psat1g046920.1;Psat3g040960.1;Psat6g182520.1;Q04593, Psat6g178400.1, A0A432N9M1, Psat6g054880.1, Psat4g213880.1, Psat2g036480.1, Psat7g102240.1, Psat0s1664g0080.1, Psat1g130000.1, A0A432NQN8, Psat3g094480.1, Psat1g046920.1;Psat3g040960.1;Psat6g072360.3;Psat6g182520.1, Psat3g197600.1, Q8VX19, Psat4g184440.1;Psat4g184760.1, Psat2g169200.1, Psat1g194520.1;Psat7g068160.1, Psat3g010120.1, Psat4g194120.1, Psat2g183320.1;Psat3g179120.1, Psat2g028440.1, P51082
Cluster sizes Help
Cluster 0: n=120 Cluster 1: n=15 Cluster 2: n=15
Per-cluster feature means Help
Cluster Psat1g153760.1;Psat2g159360.1 Psat4g000800.1 Psat7g234480.1 Psat6g170320.2 P13918;Psat0s5g0160.1;Psat5g199920.1 Psat0s3063g0160.1 Psat0s1401g0040.1 Psat1g046920.1;Psat3g040960.1;Psat6g072360.3 Psat4g103520.1 A0A0K0KZR1 Psat0s1587g0080.1 D3VNE1;D3VNE2 Psat3g204960.1 Psat4g152760.1 Psat3g066960.1;Psat4g123280.1 Psat1g060840.1 Psat3g040960.1;Q04593 Psat4g095120.1 P82333 Psat0s2970g0080.1 Psat2g102880.1 Psat5g016560.1 Psat0s2008g0040.2;Psat1g060840.1 Psat1g141040.1;Psat1g141080.3 Psat2g028040.1 Psat2g036360.1;Psat2g036520.1 Psat5g111120.1 Psat1g136200.1 Psat1g046920.1;Psat3g040960.1 P19251 Q9SSY8 Psat1g107440.1;Psat2g149200.1;Psat4g184760.1;Psat4g185080.1 Psat6g235800.1;Psat6g235800.2 Psat2g036360.1;Psat2g036480.1;Psat2g036520.1 Q7M228 Q8LP17 Psat1g046920.1;Psat3g040960.1;Q04593 Psat1g107440.1;Psat4g184440.1 Psat1g046920.1;Psat3g040960.1;Psat6g182520.1;Q04593 Psat6g178400.1 A0A432N9M1 Psat6g054880.1 Psat4g213880.1 Psat2g036480.1 Psat7g102240.1 Psat0s1664g0080.1 Psat1g130000.1 A0A432NQN8 Psat3g094480.1 Psat1g046920.1;Psat3g040960.1;Psat6g072360.3;Psat6g182520.1 Psat3g197600.1 Q8VX19 Psat4g184440.1;Psat4g184760.1 Psat2g169200.1 Psat1g194520.1;Psat7g068160.1 Psat3g010120.1 Psat4g194120.1 Psat2g183320.1;Psat3g179120.1 Psat2g028440.1 P51082
0 0.4405 444.6 30.31 4.385 2.286e+04 0.5784 1.926 0 6.093 7.909 65.43 592.6 12.34 5.33 8.402 7.385 0.009299 25.33 0.09018 2.379 0 2.637 5.565 1.671 0.09784 30.12 0 0.947 0.3039 0.4198 0.2467 43.66 0.647 108.5 34.81 3.367 0.3916 98.88 0.06642 0.6061 4.612 1006 0.41 15.59 17.6 2.318 0.213 0.5189 29.04 0.804 0.0962 334.7 48.76 0 424.9 9553 2.594 21.03 15.89 10.21
1 29.4 39.9 0.4222 0 3254 17.9 65.02 2.6 0.1413 0 25.2 373.5 0 141.3 0 28.83 13.87 98.44 0.1528 185.8 0 0 8.807 2.939 0 0 0 31.03 57.89 3.948 0 426.3 0 0 0 0 61.79 832.9 6.209 62.57 7.743 21.91 0.3176 0 414.4 11.76 0.7729 0 614.3 54.75 0.8728 0 401.4 5.009 257.7 398.8 31.03 0 19.87 256.5
2 0 35.43 0.1194 0 344.7 0 72.42 0 0 1.531 3.974 1.086 78.4 16.02 36.47 116.4 0 0 0.1182 20.62 5.312 5.693 58.43 0 0.8883 2.376 4.242 24.28 0 6.311 4.829 174 0 0 0 9.956 0 308.8 0 8.923 11.97 11.93 0.3225 1.135 1.38 0 6.14 10.87 1538 0.6594 10.63 0 167.8 10.71 98.68 105.8 0 0.9232 17.6 0
Figures
Cluster scatter Download PNG
Cluster scatter
Silhouette plot Download PNG
Silhouette plot
Elbow plot Download PNG
Elbow plot
Pathway Analysis (same dataset) Help
Run Pathway Analysis

Method & Provenance

Method
Clustering — K-Means
Method key
kmeans (result type: clustering, result #35)
Engine
Python · scikit-learn v1.8.0
Dataset(s)
#722 gallery — cat_g_proteomics_omics_only.csv
Status
completed
Permanent link
https://cat-g-omxpert.wishartlab.com/results/by-token/353bac72a0db47cbbc54087c03123afd Bookmark or share this URL — it does not depend on your session.
Created
2026-09-21 02:18:13.933986

Parameters used

ParameterValue
cluster_method kmeans
feature_cols Psat1g153760.1;Psat2g159360.1, Psat4g000800.1, Psat7g234480.1, Psat6g170320.2, P13918;Psat0s5g0160.1;Psat5g199920.1, Psat0s3063g0160.1, Psat0s1401g0040.1, Psat1g046920.1;Psat3g040960.1;Psat6g072360.3, Psat4g103520.1, A0A0K0KZR1, Psat0s1587g0080.1, D3VNE1;D3VNE2, Psat3g204960.1, Psat4g152760.1, Psat3g066960.1;Psat4g123280.1, Psat1g060840.1, Psat3g040960.1;Q04593, Psat4g095120.1, P82333, Psat0s2970g0080.1, Psat2g102880.1, Psat5g016560.1, Psat0s2008g0040.2;Psat1g060840.1, Psat1g141040.1;Psat1g141080.3, Psat2g028040.1, Psat2g036360.1;Psat2g036520.1, Psat5g111120.1, Psat1g136200.1, Psat1g046920.1;Psat3g040960.1, P19251, Q9SSY8, Psat1g107440.1;Psat2g149200.1;Psat4g184760.1;Psat4g185080.1, Psat6g235800.1;Psat6g235800.2, Psat2g036360.1;Psat2g036480.1;Psat2g036520.1, Q7M228, Q8LP17, Psat1g046920.1;Psat3g040960.1;Q04593, Psat1g107440.1;Psat4g184440.1, Psat1g046920.1;Psat3g040960.1;Psat6g182520.1;Q04593, Psat6g178400.1, A0A432N9M1, Psat6g054880.1, Psat4g213880.1, Psat2g036480.1, Psat7g102240.1, Psat0s1664g0080.1, Psat1g130000.1, A0A432NQN8, Psat3g094480.1, Psat1g046920.1;Psat3g040960.1;Psat6g072360.3;Psat6g182520.1, Psat3g197600.1, Q8VX19, Psat4g184440.1;Psat4g184760.1, Psat2g169200.1, Psat1g194520.1;Psat7g068160.1, Psat3g010120.1, Psat4g194120.1, Psat2g183320.1;Psat3g179120.1, Psat2g028440.1, P51082
n_clusters 3

Execution trace

Reconstructed from the parameters stored with this result — represents the Python/R calls the analysis service made. 

from sklearn.cluster import KMeans
labels = KMeans(n_clusters=3, n_init=10, random_state=42).fit_predict(X)
silhouette = sklearn.metrics.silhouette_score(X, labels)