Kmeans run #35 · clustering

Table view Dataset report
3
n clusters
kmeans
method
3
k
0.3488
silhouette
completed
status
2026-09-21 02:18
created
Figures
Cluster scatter Download PNG
Cluster scatter
Silhouette plot Download PNG
Silhouette plot
Elbow plot Download PNG
Elbow plot
Sizes 3 rows
namevalue
0120
115
215
Inertia Sweep 9 rows
namevalue
27622.387216920579
36661.634140013651
46197.625379712421
55589.571419135333
65319.345703156954
74789.599971771572
84433.637965228591
94054.2999861373573
103834.379517310198
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Method & Provenance

Method
Clustering — K-Means
Method key
kmeans (result type: clustering, result #35)
Engine
Python · scikit-learn v1.8.0
Dataset(s)
#722 gallery — cat_g_proteomics_omics_only.csv
Status
completed
Permanent link
https://cat-g-omxpert.wishartlab.com/results/by-token/353bac72a0db47cbbc54087c03123afd Bookmark or share this URL — it does not depend on your session.
Created
2026-09-21 02:18:13.933986

Parameters used

ParameterValue
cluster_method kmeans
feature_cols Psat1g153760.1;Psat2g159360.1, Psat4g000800.1, Psat7g234480.1, Psat6g170320.2, P13918;Psat0s5g0160.1;Psat5g199920.1, Psat0s3063g0160.1, Psat0s1401g0040.1, Psat1g046920.1;Psat3g040960.1;Psat6g072360.3, Psat4g103520.1, A0A0K0KZR1, Psat0s1587g0080.1, D3VNE1;D3VNE2, Psat3g204960.1, Psat4g152760.1, Psat3g066960.1;Psat4g123280.1, Psat1g060840.1, Psat3g040960.1;Q04593, Psat4g095120.1, P82333, Psat0s2970g0080.1, Psat2g102880.1, Psat5g016560.1, Psat0s2008g0040.2;Psat1g060840.1, Psat1g141040.1;Psat1g141080.3, Psat2g028040.1, Psat2g036360.1;Psat2g036520.1, Psat5g111120.1, Psat1g136200.1, Psat1g046920.1;Psat3g040960.1, P19251, Q9SSY8, Psat1g107440.1;Psat2g149200.1;Psat4g184760.1;Psat4g185080.1, Psat6g235800.1;Psat6g235800.2, Psat2g036360.1;Psat2g036480.1;Psat2g036520.1, Q7M228, Q8LP17, Psat1g046920.1;Psat3g040960.1;Q04593, Psat1g107440.1;Psat4g184440.1, Psat1g046920.1;Psat3g040960.1;Psat6g182520.1;Q04593, Psat6g178400.1, A0A432N9M1, Psat6g054880.1, Psat4g213880.1, Psat2g036480.1, Psat7g102240.1, Psat0s1664g0080.1, Psat1g130000.1, A0A432NQN8, Psat3g094480.1, Psat1g046920.1;Psat3g040960.1;Psat6g072360.3;Psat6g182520.1, Psat3g197600.1, Q8VX19, Psat4g184440.1;Psat4g184760.1, Psat2g169200.1, Psat1g194520.1;Psat7g068160.1, Psat3g010120.1, Psat4g194120.1, Psat2g183320.1;Psat3g179120.1, Psat2g028440.1, P51082
n_clusters 3

Execution trace

Reconstructed from the parameters stored with this result — represents the Python/R calls the analysis service made. 

from sklearn.cluster import KMeans
labels = KMeans(n_clusters=3, n_init=10, random_state=42).fit_predict(X)
silhouette = sklearn.metrics.silhouette_score(X, labels)