Result Detail – Random Forest
Result Information
- Result ID
- 143
- Type
- Random Forest
- Status
- completed
- Dataset ID
- 697
- Created
- 2026-09-21 02:13:52.593069
- Saved Model
- Available — Download .pkl
Possible data leakage detected:
- Feature "CF_NUMBER" is almost perfectly correlated with the target "CW_NUMBER" (r = 0.996) — likely data leakage or a duplicate measurement; consider excluding it.
- Mean cross-validated R² is negative (-0.049) — the model performs worse than simply predicting the mean target value. Results are unreliable; check for leakage, too few samples, or an unsuitable target.
- Only 2 cross-validation split(s) requested — variance between splits is high with fewer than 3 folds; consider raising n_splits.
Model Parameters
- Model Type
- regression
- Estimators
- 60
- Max Depth
- None
Pre-Modeling Statistics (Pearson, Spearman, ANOVA)
| Feature | Pearson r | Pearson p | Pearson FDR | Spearman ρ | Spearman FDR | ANOVA F | ANOVA FDR | Significant? |
|---|---|---|---|---|---|---|---|---|
| MEAN_PC_SHOOTMASS | 0.7414 | 0.0058 | 0.0550 | 0.5263 | 0.5670 | 12.2050 | 0.0550 | ✗ No |
| MEAN_RC_SHOOTMASS | 0.5022 | 0.0962 | 0.3327 | 0.4000 | 0.5670 | 3.3721 | 0.3327 | ✗ No |
| MEAN_PC_HEIGHT | 0.5215 | 0.0821 | 0.3327 | 0.3544 | 0.5670 | 3.7351 | 0.3327 | ✗ No |
| MEAN_ENV_SOILOC | 0.1793 | 0.5771 | 0.9621 | 0.3474 | 0.5670 | 0.3322 | 0.9621 | ✗ No |
| MEAN_ENV_SOILMOIS | 0.1431 | 0.6572 | 0.9621 | 0.1860 | 0.9721 | 0.2091 | 0.9621 | ✗ No |
| MEAN_ENV_SOILTN | 0.2084 | 0.5157 | 0.9621 | 0.3544 | 0.5670 | 0.4540 | 0.9621 | ✗ No |
| MEAN_COVER_TOTAL_JUL | 0.5775 | 0.0492 | 0.3119 | 0.3965 | 0.5670 | 5.0047 | 0.3119 | ✗ No |
| MEAN_COVER_SHANNON_JUL | -0.0670 | 0.8360 | 0.9621 | -0.0947 | 0.9927 | 0.0451 | 0.9621 | ✗ No |
| MEAN_PC_WOODMASS | -0.4277 | 0.1654 | 0.4490 | -0.3509 | 0.5670 | 2.2393 | 0.4490 | ✗ No |
| PLOT_COUNT | -0.0412 | 0.8988 | 0.9621 | -0.0242 | 0.9927 | 0.0170 | 0.9621 | ✗ No |
| PASTURE_TOTALAREA | -0.0154 | 0.9621 | 0.9621 | 0.0386 | 0.9927 | 0.0024 | 0.9621 | ✗ No |
| PASTURE_FORESTAREA | 0.1155 | 0.7208 | 0.9621 | 0.0386 | 0.9927 | 0.1352 | 0.9621 | ✗ No |
| PASTURE_WETLANDAREA | 0.0861 | 0.7901 | 0.9621 | 0.0772 | 0.9927 | 0.0747 | 0.9621 | ✗ No |
| MEAN_ENV_PH | -0.4910 | 0.1051 | 0.3327 | -0.3684 | 0.5670 | 3.1760 | 0.3327 | ✗ No |
| MEAN_ENV_SOILP | 0.0278 | 0.9318 | 0.9621 | 0.0000 | 1.0000 | 0.0077 | 0.9621 | ✗ No |
| PASTURE_BIOMASS_PREDICTED | -0.2480 | 0.4371 | 0.9228 | -0.1544 | 0.9927 | 0.6551 | 0.9228 | ✗ No |
| PASTURE_HA | -0.2723 | 0.3919 | 0.9228 | -0.3123 | 0.6138 | 0.8009 | 0.9228 | ✗ No |
| CF_NUMBER | 0.9959 | 0.0000 | 0.0000 | 0.9930 | 0.0000 | 1224.9963 | 0.0000 | ✓ Yes |
| SR_NUMBER | 0.0723 | 0.8234 | 0.9621 | 0.0782 | 0.9927 | 0.0525 | 0.9621 | ✗ No |
Feature Importance (Random Forest)
| Rank | Feature | Importance (Mean) | SD |
|---|---|---|---|
| 1 | CF_NUMBER | 0.2971 | 0.0042 |
| 2 | MEAN_ENV_PH | 0.0975 | 0.0073 |
| 3 | MEAN_PC_SHOOTMASS | 0.0772 | 0.0032 |
| 4 | MEAN_COVER_SHANNON_JUL | 0.0744 | 0.0057 |
| 5 | MEAN_COVER_TOTAL_JUL | 0.0602 | 0.0098 |
| 6 | MEAN_ENV_SOILTN | 0.0440 | 0.0001 |
| 7 | PASTURE_FORESTAREA | 0.0424 | 0.0100 |
| 8 | MEAN_ENV_SOILMOIS | 0.0421 | 0.0232 |
| 9 | MEAN_PC_WOODMASS | 0.0420 | 0.0006 |
| 10 | PASTURE_WETLANDAREA | 0.0397 | 0.0046 |
| 11 | PASTURE_HA | 0.0387 | 0.0233 |
| 12 | SR_NUMBER | 0.0367 | 0.0038 |
| 13 | MEAN_RC_SHOOTMASS | 0.0322 | 0.0176 |
| 14 | MEAN_ENV_SOILOC | 0.0250 | 0.0069 |
| 15 | PASTURE_TOTALAREA | 0.0156 | 0.0121 |
| 16 | PASTURE_BIOMASS_PREDICTED | 0.0124 | 0.0023 |
| 17 | MEAN_PC_HEIGHT | 0.0100 | 0.0062 |
| 18 | PLOT_COUNT | 0.0067 | 0.0064 |
| 19 | MEAN_ENV_SOILP | 0.0060 | 0.0016 |
Permutation Importance
| Rank | Feature | Perm. Importance (Mean) | SD |
|---|---|---|---|
| 1 | CF_NUMBER | 0.3776 | 0.2402 |
| 2 | MEAN_ENV_SOILTN | 0.3282 | 0.0149 |
| 3 | PASTURE_HA | 0.2403 | 0.1183 |
| 4 | MEAN_ENV_SOILOC | 0.1988 | 0.0757 |
| 5 | MEAN_COVER_TOTAL_JUL | 0.1326 | 0.0675 |
| 6 | MEAN_RC_SHOOTMASS | 0.1305 | 0.1049 |
| 7 | MEAN_ENV_SOILMOIS | 0.0882 | 0.1146 |
| 8 | MEAN_PC_SHOOTMASS | 0.0848 | 0.0056 |
| 9 | MEAN_ENV_SOILP | 0.0598 | 0.0180 |
| 10 | MEAN_PC_HEIGHT | 0.0261 | 0.0197 |
| 11 | PASTURE_BIOMASS_PREDICTED | 0.0137 | 0.0000 |
| 12 | SR_NUMBER | 0.0041 | 0.0068 |
| 13 | MEAN_ENV_PH | -0.0044 | 0.0015 |
| 14 | PASTURE_FORESTAREA | -0.0196 | 0.0233 |
| 15 | MEAN_COVER_SHANNON_JUL | -0.0279 | 0.0316 |
| 16 | PASTURE_TOTALAREA | -0.0378 | 0.0538 |
| 17 | PLOT_COUNT | -0.0490 | 0.0555 |
| 18 | MEAN_PC_WOODMASS | -0.0560 | 0.0252 |
| 19 | PASTURE_WETLANDAREA | -0.1805 | 0.1198 |
SHAP Feature Importance
| Rank | Feature | SHAP Mean |Abs| |
|---|---|---|
| 1 | CF_NUMBER | 1.5668 |
| 2 | MEAN_ENV_PH | 0.5475 |
| 3 | PASTURE_FORESTAREA | 0.3528 |
| 4 | MEAN_ENV_SOILTN | 0.3429 |
| 5 | MEAN_RC_SHOOTMASS | 0.3050 |
| 6 | MEAN_PC_SHOOTMASS | 0.2653 |
| 7 | MEAN_PC_WOODMASS | 0.2287 |
| 8 | MEAN_ENV_SOILMOIS | 0.2250 |
| 9 | MEAN_COVER_TOTAL_JUL | 0.1733 |
| 10 | PASTURE_WETLANDAREA | 0.1630 |
| 11 | PASTURE_HA | 0.1630 |
| 12 | MEAN_PC_HEIGHT | 0.1122 |
| 13 | SR_NUMBER | 0.1109 |
| 14 | MEAN_ENV_SOILOC | 0.1089 |
| 15 | PASTURE_BIOMASS_PREDICTED | 0.0998 |
| 16 | MEAN_COVER_SHANNON_JUL | 0.0854 |
| 17 | MEAN_ENV_SOILP | 0.0696 |
| 18 | PASTURE_TOTALAREA | 0.0581 |
| 19 | PLOT_COUNT | 0.0100 |
Model Metrics
| Split | R² | MSE |
|---|---|---|
| Split 1 | -0.0791 | 7.4336 |
| Split 2 | -0.0193 | 7.0220 |
| Mean | -0.0492 | 7.2278 |
Figures
Feature importance
Download PNG
Permutation importance
Download PNG
SHAP summary
Download PNG
Observed vs predicted (out-of-fold)
Download PNG
Cross-validation score distribution
Download PNG
Pathway Analysis (same dataset)
Method & Provenance
- Method
- Random Forest (Regression)
- Method key
random_forest(result type:random_forest, result #143)- Engine
- Python · scikit-learn v1.8.0
- Dataset(s)
- #697 gallery — catg_example_02_grazing_carrying_capacity.csv
- Status
- completed
- Permanent link
- https://cat-g-omxpert.wishartlab.com/results/by-token/c2f085d2764a43e3b8a578284d15edb5 Bookmark or share this URL — it does not depend on your session.
- Created
- 2026-09-21 02:13:52.593069
Parameters used
| Parameter | Value |
|---|---|
task_type | regression |
model_type | regression |
target_column | CW_NUMBER |
n_estimators | 60 |
n_splits | 2 |
test_size | 0.25 |
run_univariate | True |
run_permutation | True |
run_shap | True |
permutation_repeats | 10 |
fdr_threshold | 0.05 |
Execution trace
Reconstructed from the parameters stored with this result — represents the Python/R calls the analysis service made.
from sklearn.ensemble import RandomForestRegressor
model = RandomForestRegressor(n_estimators=60, random_state=42)
scores = sklearn.model_selection.cross_val_score(model, X, y, cv=2)